qiita_ptid_11092:13662.BLANK2beam.2H - SRA

ERX12673726: qiita_ptid_11092:13662.BLANK2beam.2H
1 ILLUMINA (Illumina MiSeq) run: 543 spots, 81,949 bases, 110,006b downloads

Design: fecal samples from BEAm Wake Forest U19

Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)

Study: Gut microbiome alterations in Alzheimers disease _WF-BEAM

PRJEB76849 • ERP161337 • All experiments • All runs

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fecal and blood samples from a diet intervention in people with cognitive impairment and AD

Sample: 13662.BLANK2beam.2H; BEAM_U19

SAMEA115767183 • ERS20301840 • All experiments • All runs

Organism: metagenome

Library:

Name: 13662.BLANK2beam.2H

Instrument: Illumina MiSeq

Strategy: AMPLICON

Source: METAGENOMIC

Selection: PCR

Layout: SINGLE

Construction protocol: Illumina EMP protocol 515fbc, 806r amplification of 16S rRNA V4 - plate compression was not standard - 394 wells

Experiment attributes: (show all 29 attributes...) (hide...)

barcode: ATACCGTCTTTC

center_name: UCSDMI

center_project_name: BEAM Wake Forest U19

extraction_robot: Carmen_HOWE_KF3

extractionkit_lot: 166015887

linker: GT

mastermix_lot: 978215

orig_name: BLANK2beam.2H

pcr_primers: FWD:GTGYCAGCMGCCGCGGTAA; REV:GGACTACNVGGGTWTCTAAT

plating: NA

primer: GTGTGYCAGCMGCCGCGGTAA

primer_date: 20121

primer_plate: not provided

processing_robot: MosquitoHT

project_name: BEAM_U19

run_center: UCSDMI

run_date: 6/18/21

run_prefix: TMI_AGP_296_298_BEAM_U19_1-2_NCRAD_1-2_S1_L001

runid: 210618_M05314_0293_000000000-JML7V

sample_plate: BEAM_US_Plate_1_2

sequencing_meth: Sequencing by synthesis

target_gene: 16S rRNA

target_subfragment: V4

tm1000_8_tool: 108379Z

tm300_8_tool: NA

tm50_8_tool: NA

water_lot: RNBJ0628

well_description: BEAM_US_Plate_1_2_BLANK2beam.2H_P22

well_id: P22

Runs: 1 run, 543 spots, 81,949 bases, 110,006b

Run	# of Spots	# of Bases	Size	Published
ERR13302866	543	81,949	110,006b	2024-07-30

ID:: 34455690

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